STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK60815.1Hypothetical upf0297 protein; Belongs to the UPF0297 family (84 aa)    
Predicted Functional Partners:
ABK60457.1
Putative holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
 
     0.824
ABK60567.1
Conserved hypothetical protein; Identified by match to protein family HMM PF04296
  
   
 0.766
alaS
Alanyl-trna synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
       0.763
ABK62146.1
Conserved hypothetical protein; Belongs to the UPF0473 family
     
 0.737
ABK62244.1
Trna (adenine22-n1)-methyltransferase; Identified by match to protein family HMM PF04816
  
     0.659
ABK62112.1
annotation not available
  
     0.641
ABK61523.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family
       0.638
ABK60623.1
Stage V sporulation protein B; Identified by match to protein family HMM PF01943
  
     0.629
ABK60960.1
Gene regulatory 13k protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein
  
     0.614
ABK61463.1
Fibronectin-binding protein; Identified by match to protein family HMM PF05670; match to protein family HMM PF05833
  
     0.612
Your Current Organism:
Clostridium novyi NT
NCBI taxonomy Id: 386415
Other names: C. novyi NT, Clostridium novyi str. NT, Clostridium novyi strain NT, Clostridium novyi-NT
Server load: low (24%) [HD]