POLR3D protein (Alligator sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

POLR3D

DNA-directed RNA polymerase III subunit RPC4 isoform X2. (420 aa)

Predicted Functional Partners:

POLR3C

0.999

POLR3F

0.999

POLR3E

0.999

POLR2E

0.998

POLR3B

0.998

POLR2H

0.998

POLR3A

0.998

POLR1C

0.998

CRCP

0.998

POLR3H

0.998

Your Current Organism:

Alligator sinensis

NCBI taxonomy Id: 38654
Other names: A. sinensis, Chinese alligator, MNHN 6494

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRCP	POLR1C	A0A1U7S8X3	A0A1U7S4T9	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.998
CRCP	POLR2E	A0A1U7S8X3	A0A1U7R541	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.998
CRCP	POLR2H	A0A1U7S8X3	A0A1U7RMX0	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
CRCP	POLR3A	A0A1U7S8X3	A0A1U7RT71	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CRCP	POLR3B	A0A1U7S8X3	A0A1U7RJ42	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CRCP	POLR3C	A0A1U7S8X3	A0A1U7S2F6	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
CRCP	POLR3D	A0A1U7S8X3	A0A1U7S492	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerase III subunit RPC4 isoform X2.	0.998
CRCP	POLR3E	A0A1U7S8X3	A0A1U7S8F6	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerase III subunit RPC5 isoform X1.	0.998
CRCP	POLR3F	A0A1U7S8X3	A0A1U7S3G8	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
CRCP	POLR3H	A0A1U7S8X3	A0A1U7S938	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	DNA-directed RNA polymerase III subunit RPC8.	0.999
POLR1C	CRCP	A0A1U7S4T9	A0A1U7S8X3	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase III subunit RPC9 isoform X1.	0.998
POLR1C	POLR2E	A0A1U7S4T9	A0A1U7R541	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
POLR1C	POLR2H	A0A1U7S4T9	A0A1U7RMX0	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
POLR1C	POLR3A	A0A1U7S4T9	A0A1U7RT71	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1C	POLR3B	A0A1U7S4T9	A0A1U7RJ42	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1C	POLR3C	A0A1U7S4T9	A0A1U7S2F6	DNA-directed RNA polymerases I and III subunit RPAC1.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
POLR1C	POLR3D	A0A1U7S4T9	A0A1U7S492	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase III subunit RPC4 isoform X2.	0.998
POLR1C	POLR3E	A0A1U7S4T9	A0A1U7S8F6	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase III subunit RPC5 isoform X1.	0.998
POLR1C	POLR3F	A0A1U7S4T9	A0A1U7S3G8	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.998
POLR1C	POLR3H	A0A1U7S4T9	A0A1U7S938	DNA-directed RNA polymerases I and III subunit RPAC1.	DNA-directed RNA polymerase III subunit RPC8.	0.998