STRINGSTRING
lspA protein (Sulfurovum sp. NBC371) - STRING interaction network
"lspA" - Lipoprotein signal peptidase in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspALipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (146 aa)    
Predicted Functional Partners:
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate (445 aa)
   
 
  0.962
SUN_0067
Hypothetical protein (316 aa)
              0.859
SUN_0068
Hypothetical protein (272 aa)
              0.859
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (89 aa)
              0.672
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA (355 aa)
   
   
  0.636
pheT
phenylalanyl-tRNA synthetase subunit beta (777 aa)
   
   
  0.572
SUN_1164
2-acylglycerophosphoethanolamine acyltransferase (1153 aa)
         
  0.565
lepB
Signal peptidase I (321 aa)
   
   
  0.564
polA
DNA polymerase I (898 aa)
           
  0.554
mviN
Virulence factor MviN (468 aa)
   
      0.513
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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