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rsmI protein (Sulfurovum sp. NBC371) - STRING interaction network
"rsmI" - Hypothetical protein in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsmIHypothetical protein; Catalyzes the 2’-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA (270 aa)    
Predicted Functional Partners:
SUN_0222
RNA methyltransferase (234 aa)
   
   
  0.883
SUN_0224
Aspartate aminotransferase (407 aa)
   
        0.841
SUN_0225
Homoserine dehydrogenase (425 aa)
   
        0.830
SUN_0223
Hypothetical protein (173 aa)
              0.797
SUN_0292
uroporphyrin-III C-methyltransferase (245 aa)
       
    0.773
SUN_0295
Hypothetical protein (188 aa)
       
    0.770
SUN_0226
Hypothetical protein (166 aa)
              0.754
rpmE
50S ribosomal protein L31; Binds the 23S rRNA (66 aa)
   
   
  0.741
SUN_1892
uroporphyrinogen-III synthase (213 aa)
       
    0.715
dnaX
DNA polymerase III subunit gamma and tau (666 aa)
 
        0.670
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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