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gmd protein (Sulfurovum sp. NBC371) - STRING interaction network
"gmd" - GDP-mannose 4,6-dehydratase in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (345 aa)    
Predicted Functional Partners:
SUN_0324
Mannose-1-phosphate guanylyltransferase (456 aa)
   
 
  0.994
SUN_1275
Mannose-1-phosphate guanylyltransferase (840 aa)
   
 
  0.990
SUN_0343
NAD-dependent epimerase/dehydratase (299 aa)
 
0.985
SUN_0344
Glycosyl transferase family protein (384 aa)
   
   
  0.923
SUN_1549
TDP-4-oxo-6-deoxy-D-glucose transaminase (567 aa)
   
 
  0.914
SUN_2143
Sugar epimerase/dehydratase (305 aa)
       
    0.902
SUN_2138
CDP-glucose 4,6-dehydratase (362 aa)
   
0.885
cpsG
Phosphomannomutase (474 aa)
   
 
  0.874
SUN_2144
Aminotransferase (443 aa)
       
  0.871
SUN_0105
Aminotransferase (366 aa)
       
  0.871
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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