STRINGSTRING
xerD protein (Sulfurovum sp. NBC371) - STRING interaction network
"xerD" - Site-specific DNA tyrosine recombinase XerD in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDSite-specific DNA tyrosine recombinase XerD (271 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase (350 aa)
     
    0.833
SUN_0420
Hypothetical protein (336 aa)
              0.821
SUN_0419
Hypothetical protein (192 aa)
              0.803
SUN_1778
Chromosome partitioning protein, ATPase ParA (261 aa)
 
   
  0.712
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA (512 aa)
 
 
  0.625
SUN_1351
Cell division protein FtsK (759 aa)
 
 
 
  0.610
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO (189 aa)
   
   
  0.599
aroE
Shikimate 5-dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA) (265 aa)
     
    0.584
SUN_0951
methylated-DNA-[protein]-cysteine S-methyltransferase (176 aa)
 
 
 
  0.568
SUN_0418
Hypothetical protein (396 aa)
              0.557
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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