STRINGSTRING
dnaE protein (Sulfurovum sp. NBC371) - STRING interaction network
"dnaE" - DNA polymerase III subunit alpha in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaEDNA polymerase III subunit alpha (1188 aa)    
Predicted Functional Partners:
dnaX
DNA polymerase III subunit gamma and tau (666 aa)
 
  0.999
dnaN
DNA polymerase III subunit beta; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3’ to 5’ exonuclease activity. The beta chain is required for initiation of replication once it is clamped onto DNA, it slides freely (bidirectional and ATP- independent) along duplex DNA (355 aa)
   
  0.999
SUN_0458
DNA polymerase III subunit delta’ (205 aa)
   
  0.995
SUN_0430
DNA polymerase III subunit delta (325 aa)
     
  0.988
dnaQ
DNA polymerase III subunit epsilon (206 aa)
   
  0.986
SUN_2154
DNA polymerase III subunit epsilon (272 aa)
   
  0.986
ssb
ssDNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism (165 aa)
   
 
  0.980
polA
DNA polymerase I (898 aa)
   
  0.972
SUN_0436
Pyruvate kinase (488 aa)
       
  0.944
SUN_1599
Exonuclease (263 aa)
   
  0.932
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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