STRINGSTRING
cspC protein (Sulfurovum sp. NBC371) - STRING interaction network
"cspC" - Cold shock protein in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspCCold shock protein (72 aa)    
Predicted Functional Partners:
dbpA
ATP-independent RNA helicase DbpA (453 aa)
   
  0.899
SUN_1435
DEAD/DEAH box helicase (460 aa)
   
  0.899
rhlE
ATP-dependent RNA helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA-dependent ATPase activity and unwinds double-stranded RNA (457 aa)
   
  0.899
deaD
DEAD/DEAH box helicase (492 aa)
   
  0.899
SUN_0713
ATP-dependent RNA helicase (447 aa)
   
  0.899
SUN_1028
Hypothetical protein (938 aa)
   
  0.894
dnaK
Chaperone protein DnaK; Acts as a chaperone (627 aa)
   
  0.854
SUN_0675
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (175 aa)
   
  0.839
hrpB
ATP-dependent helicase HrpB (827 aa)
       
  0.830
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (333 aa)
     
  0.797
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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