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ubiD protein (Sulfurovum sp. NBC371) - STRING interaction network
"ubiD" - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase in Sulfurovum sp. NBC371
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiD3-octaprenyl-4-hydroxybenzoate carboxy-lyase (609 aa)    
Predicted Functional Partners:
ubiA
Prenyltransferase (296 aa)
 
  0.996
ubiX
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (173 aa)
 
 
  0.984
SUN_1522
UbiA prenyltransferase family protein (289 aa)
   
  0.880
SUN_0330
UbiA prenyltransferase family protein (289 aa)
   
  0.880
SUN_2122
ABC transporter (514 aa)
   
 
  0.848
ilvE
Branched-chain amino acid aminotransferase (304 aa)
         
    0.747
SUN_0387
Hypothetical protein (196 aa)
         
    0.709
mqnC
Hypothetical protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) (351 aa)
 
     
  0.694
mqnE
Hypothetical protein; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1- carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate (357 aa)
 
     
  0.656
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2- polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2) (245 aa)
 
   
  0.635
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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