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ubiX protein (Sulfurovum sp. NBC371) - STRING interaction network
"ubiX" - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase in Sulfurovum sp. NBC371
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase (173 aa)    
Predicted Functional Partners:
ubiA
Prenyltransferase (296 aa)
 
 
  0.994
ubiD
3-octaprenyl-4-hydroxybenzoate carboxy-lyase (609 aa)
 
 
  0.984
SUN_1522
UbiA prenyltransferase family protein (289 aa)
     
  0.877
SUN_0330
UbiA prenyltransferase family protein (289 aa)
     
  0.877
SUN_2122
ABC transporter (514 aa)
   
 
  0.838
ilvE
Branched-chain amino acid aminotransferase (304 aa)
     
    0.738
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (191 aa)
   
        0.681
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4’- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate (158 aa)
         
  0.678
hisS
histidyl-tRNA synthetase (403 aa)
              0.605
mqnC
Hypothetical protein; Radical SAM enzyme that catalyzes the cyclization of dehypoxanthine futalosine (DHFL) into cyclic dehypoxanthine futalosine (CDHFL), a step in the biosynthesis of menaquinone (MK, vitamin K2) (351 aa)
 
     
  0.594
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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