STRINGSTRING
rfbD protein (Sulfurovum sp. NBC371) - STRING interaction network
"rfbD" - dTDP-4-dehydrorhamnose reductase in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbDdTDP-4-dehydrorhamnose reductase (288 aa)    
Predicted Functional Partners:
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase (191 aa)
 
  0.999
SUN_1552
dTDP-glucose 4,6-dehydratase (469 aa)
 
 
  0.991
SUN_1714
Hypothetical protein (177 aa)
 
 
  0.985
metK
S-adenosylmethionine synthetase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (386 aa)
     
  0.931
SUN_1452
S-adenosylmethionine synthetase (405 aa)
     
  0.931
SUN_1554
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (290 aa)
   
  0.928
SUN_1713
Glycosyl transferase family protein (316 aa)
   
   
  0.926
SUN_2138
CDP-glucose 4,6-dehydratase (362 aa)
   
  0.886
SUN_0343
NAD-dependent epimerase/dehydratase (299 aa)
   
  0.886
SUN_1711
Capsule polysaccharide export protein (396 aa)
              0.862
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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