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rfbC protein (Sulfurovum sp. NBC371) - STRING interaction network
"rfbC" - dTDP-4-dehydrorhamnose 3,5-epimerase in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase (191 aa)    
Predicted Functional Partners:
rfbD
dTDP-4-dehydrorhamnose reductase (288 aa)
 
  0.999
SUN_1552
dTDP-glucose 4,6-dehydratase (469 aa)
 
 
  0.994
SUN_1714
Hypothetical protein (177 aa)
 
 
  0.985
SUN_1275
Mannose-1-phosphate guanylyltransferase (840 aa)
   
  0.951
SUN_1713
Glycosyl transferase family protein (316 aa)
   
   
  0.926
SUN_2137
Glucose-1-phosphate cytidylyltransferase (259 aa)
   
  0.918
SUN_1239
Nucleotidyltransferase (238 aa)
   
  0.916
SUN_2138
CDP-glucose 4,6-dehydratase (362 aa)
   
  0.894
SUN_0106
Sugar epimerase/dehydratase (593 aa)
   
 
  0.886
SUN_0343
NAD-dependent epimerase/dehydratase (299 aa)
   
  0.879
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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