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trmB protein (Sulfurovum sp. NBC371) - STRING interaction network
"trmB" - tRNA in Sulfurovum sp. NBC371
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (395 aa)    
Predicted Functional Partners:
SUN_1752
Hypothetical protein (199 aa)
 
     
  0.942
SUN_1750
Cell division ATP-binding protein FtsE (224 aa)
   
   
  0.898
SUN_1749
Cell division protein FtsX (271 aa)
         
  0.895
SUN_1748
M24/M37 family peptidase (460 aa)
         
  0.895
rluD
Ribosomal large subunit pseudouridine synthase D; Responsible for synthesis of pseudouridine from uracil (317 aa)
 
   
  0.868
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (68 aa)
 
        0.736
SUN_1754
Hypothetical protein (265 aa)
   
   
  0.663
SUN_0111
Molybdenum cofactor biosynthesis protein E (144 aa)
   
          0.657
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP (235 aa)
              0.648
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (284 aa)
 
   
  0.624
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum, Sulfurovum Inagaki et al. 2004, Sulfurovum NBC37_1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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