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STRINGSTRING
rluD protein (Sulfurovum sp. NBC371) - STRING interaction network
"rluD" - Pseudouridine synthase in Sulfurovum sp. NBC371
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluDPseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (317 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (395 aa)
 
   
  0.820
SUN_1752
annotation not available (199 aa)
   
        0.814
SUN_1750
annotation not available (224 aa)
   
        0.796
SUN_1748
annotation not available (460 aa)
   
        0.794
SUN_1749
annotation not available (271 aa)
   
   
  0.789
fabD
annotation not available (314 aa)
   
      0.734
pyrH
Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP (235 aa)
 
          0.719
SUN_1754
annotation not available (265 aa)
   
   
  0.699
SUN_1371
annotation not available (256 aa)
 
 
  0.688
pfs
5’-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5’-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5’-methylthioribose and S-ribosylhomocysteine, respectively; Belongs to the PNP/UDP phosphorylase family. MtnN subfamily (244 aa)
              0.680
Your Current Organism:
Sulfurovum sp. NBC371
NCBI taxonomy Id: 387093
Other names: S. sp. NBC37-1, Sulfurovum sp. NBC37-1, Sulfurovum sp. NBC371
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