Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LVIS_0506 | acpS | LVIS_0506 | LVIS_0507 | Hypothetical protein. | Phosphopantetheinyl transferase (holo-ACP synthase); Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.448 |
LVIS_0506 | alr | LVIS_0506 | LVIS_0508 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.448 |
LVIS_0506 | cshA | LVIS_0506 | LVIS_0505 | Hypothetical protein. | Superfamily II DNA and RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 0.473 |
LVIS_0509 | LVIS_0510 | LVIS_0509 | LVIS_0510 | Hypothetical protein. | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse); Toxic component of a type II toxin-antitoxin (TA) system. | 0.655 |
LVIS_0509 | acpS | LVIS_0509 | LVIS_0507 | Hypothetical protein. | Phosphopantetheinyl transferase (holo-ACP synthase); Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.541 |
LVIS_0509 | alr | LVIS_0509 | LVIS_0508 | Hypothetical protein. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.541 |
LVIS_0510 | LVIS_0509 | LVIS_0510 | LVIS_0509 | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse); Toxic component of a type II toxin-antitoxin (TA) system. | Hypothetical protein. | 0.655 |
LVIS_0510 | acpS | LVIS_0510 | LVIS_0507 | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse); Toxic component of a type II toxin-antitoxin (TA) system. | Phosphopantetheinyl transferase (holo-ACP synthase); Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.619 |
LVIS_0510 | alr | LVIS_0510 | LVIS_0508 | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse); Toxic component of a type II toxin-antitoxin (TA) system. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.614 |
LVIS_0510 | cshA | LVIS_0510 | LVIS_0505 | Toxin-antitoxin addiction module toxin component MazF (an endoRNAse); Toxic component of a type II toxin-antitoxin (TA) system. | Superfamily II DNA and RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 0.438 |
LVIS_0924 | acpP | LVIS_0924 | LVIS_0934 | Biotin operon repressor. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.760 |
LVIS_0924 | acpP-2 | LVIS_0924 | LVIS_0953 | Biotin operon repressor. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.400 |
LVIS_0924 | acpS | LVIS_0924 | LVIS_0507 | Biotin operon repressor. | Phosphopantetheinyl transferase (holo-ACP synthase); Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.442 |
LVIS_0924 | alr | LVIS_0924 | LVIS_0508 | Biotin operon repressor. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.544 |
LVIS_0924 | dltC | LVIS_0924 | LVIS_1324 | Biotin operon repressor. | D-alanyl carrier protein; Carrier protein involved in the D-alanylation of lipoteichoic acid (LTA). The loading of thioester-linked D-alanine onto DltC is catalyzed by D-alanine--D-alanyl carrier protein ligase DltA. The DltC- carried D-alanyl group is further transferred to cell membrane phosphatidylglycerol (PG) by forming an ester bond, probably catalyzed by DltD. D-alanylation of LTA plays an important role in modulating the properties of the cell wall in Gram-positive bacteria, influencing the net charge of the cell wall. | 0.400 |
acpP | LVIS_0924 | LVIS_0934 | LVIS_0924 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Biotin operon repressor. | 0.760 |
acpP | acpP-2 | LVIS_0934 | LVIS_0953 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.905 |
acpP | acpS | LVIS_0934 | LVIS_0507 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | Phosphopantetheinyl transferase (holo-ACP synthase); Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.764 |
acpP-2 | LVIS_0924 | LVIS_0953 | LVIS_0924 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Biotin operon repressor. | 0.400 |
acpP-2 | acpP | LVIS_0953 | LVIS_0934 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.905 |
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