STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LVIS_1003Predicted membrane protein. (876 aa)    
Predicted Functional Partners:
LVIS_0513
Hypothetical protein.
  
     0.635
LVIS_0775
LysM domain.
  
     0.612
LVIS_0031
Hypothetical protein.
  
     0.512
LVIS_1547
Hypothetical protein.
  
     0.504
LVIS_0856
Hypothetical protein.
  
     0.499
LVIS_1435
Hypothetical protein.
  
     0.493
mecA
Negative regulator of genetic competence, sporulation and motility; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.
  
     0.459
LVIS_1575
Glycosyltransferase related enzyme.
 
  
 0.453
LVIS_0773
Hypothetical protein.
  
     0.449
LVIS_1582
Hypothetical protein.
  
     0.436
Your Current Organism:
Lactobacillus brevis
NCBI taxonomy Id: 387344
Other names: L. brevis ATCC 367, Lactobacillus brevis ATCC 367, Lactobacillus brevis str. ATCC 367, Lactobacillus brevis strain ATCC 367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.