STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRP_110RecA recombinase; Belongs to the RecA family. (296 aa)    
Predicted Functional Partners:
rpoB
RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
 0.913
CRP_109
Putative alanyl-tRNA synthetase.
  
  
 0.904
CRP_108
Aspartokinase; Belongs to the aspartokinase family.
       0.880
CRP_112
Alkyl hydroperoxide reductase.
  
 
 0.835
CRP_102
methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.711
CRP_055
Putative replicative DNA helicase.
  
  
 0.704
rpoA
RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.667
CRP_111
valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.661
CRP_143
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
   
 
 0.611
CRP_068
Putative translation initiation factor IF-2.
  
 
 0.582
Your Current Organism:
Carsonella ruddii PV
NCBI taxonomy Id: 387662
Other names: C. Carsonella ruddii PV, Candidatus Carsonella ruddii PV, Candidatus Carsonella ruddii str. PV, Candidatus Carsonella ruddii strain PV, Carsonella-Pv
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