STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B7FHD4_MEDTR50S ribosomal protein 6. (104 aa)    
Predicted Functional Partners:
B7FHB7_MEDTR
Uncharacterized protein.
   
 
 0.966
A0A072VPH5
Putative ribosomal protein L21.
   
 
 0.942
G7JN21_MEDTR
Putative 30S ribosomal protein.
   
 
 0.912
rpl20
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
 
 0.906
G7J3M7_MEDTR
Putative ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.900
G7IHC1_MEDTR
50S ribosomal L24-like protein; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.885
G7IW75_MEDTR
Putative ribosomal protein L27.
   
 
 0.881
B7FMM7_MEDTR
Plastid-specific 30S ribosomal protein, putative.
    
 
 0.876
G7J1T1_MEDTR
Putative nucleotide-binding alpha-beta plait domain-containing protein.
    
 
 0.876
G7J8Z9_MEDTR
Putative ribosomal protein S30Ae/sigma 54 modulation protein.
    
 
 0.876
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.