STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G7JS69_MEDTRAuxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (1120 aa)    
Predicted Functional Partners:
G7LF25_MEDTR
RNA polymerase II, Rpb4, core protein.
    
 0.933
Q2HU21_MEDTR
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.933
Q2MGQ5_MEDTR
RPB3 DNA-directed RNA polymerase II subunit 3.
    
 0.933
G7J900_MEDTR
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.929
G7LDX0_MEDTR
Transcription initiation factor IIE, putative.
    
 0.902
MTR_0332s0040
Ubiquitin-conjugating enzyme.
    
 0.886
MTR_0019s0160
Putative DNA-directed RNA polymerase.
    
 0.869
A2Q3E0_MEDTR
DNA-directed RNA polymerase, 14 to 18 kDa subunit.
    
 0.869
G7IXS2_MEDTR
Putative DNA-directed RNA polymerase.
    
 0.869
G7KI14_MEDTR
DNA-directed RNA polymerase I, II; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
 0.869
Your Current Organism:
Medicago truncatula
NCBI taxonomy Id: 3880
Other names: M. truncatula, Medicago truncatula Gaertn., barrel medic
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