STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 1; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (279 aa)    
Predicted Functional Partners:
EAZ81035.1
Oxidoreductase, short-chain dehydrogenase/reductase family.
 
  0.952
EAZ81037.1
Altronate oxidoreductase.
 
   
 0.882
EAZ81033.1
exo-poly-alpha-D-galacturonosidase; Belongs to the glycosyl hydrolase 28 family.
 
     0.741
uxaC
Glucuronate isomerase.
 
  
 0.702
EAZ79363.2
Hypothetical protein.
   
    0.697
EAZ81032.1
Putative carbohydrate esterase, Family 12, YesT.
 
     0.665
EAZ81036.1
Transcriptional regulator.
     
 0.624
EAZ82879.1
Hydrolase, UxaA family.
 
  
 0.618
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.611
EAZ82880.1
KHG/KDPG family aldolase/carbohydrate kinase, PfkB family.
 
  
 0.452
Your Current Organism:
Algoriphagus machipongonensis
NCBI taxonomy Id: 388413
Other names: A. machipongonensis, ATCC BAA-2233, Algoriphagus machipongonensis Alegado et al. 2013, Algoriphagus sp. PR1, DSM 24695, strain PR1
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