talC protein (Planktothrix agardhii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

talC

TalC. (213 aa)

Predicted Functional Partners:

tkt

0.966

nifJ

0.920

gnd

0.891

pykF

0.835

ptsI-2

0.829

nagF

0.829

zwf

0.809

ptsG

0.805

ppsA

0.785

pgi

0.784

Your Current Organism:

Planktothrix agardhii

NCBI taxonomy Id: 388467
Other names: P. agardhii NIVA-CYA 126/8, Planktothrix agardhii NIVA-CYA 126/8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
gnd	pgi	A19Y_3369	A19Y_2269	Gnd; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Pgi; Belongs to the GPI family.	0.475
gnd	pykF	A19Y_3369	A19Y_4397	Gnd; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	PykF; Belongs to the pyruvate kinase family.	0.559
gnd	talC	A19Y_3369	A19Y_2243	Gnd; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	TalC.	0.891
gnd	tkt	A19Y_3369	A19Y_1525	Gnd; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Tkt; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.913
gnd	zwf	A19Y_3369	A19Y_1509	Gnd; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.	Zwf; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.	0.996
nagF	nifJ	A19Y_3691	A19Y_2986	NagF.	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	0.925
nagF	pgi	A19Y_3691	A19Y_2269	NagF.	Pgi; Belongs to the GPI family.	0.911
nagF	ppsA	A19Y_3691	A19Y_0273	NagF.	PpsA.	0.842
nagF	ptsG	A19Y_3691	A19Y_3689	NagF.	PtsG.	0.999
nagF	ptsI-2	A19Y_3691	A19Y_3690	NagF.	PtsI.	0.999
nagF	pykF	A19Y_3691	A19Y_4397	NagF.	PykF; Belongs to the pyruvate kinase family.	0.949
nagF	talC	A19Y_3691	A19Y_2243	NagF.	TalC.	0.829
nagF	tkt	A19Y_3691	A19Y_1525	NagF.	Tkt; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.	0.880
nagF	zwf	A19Y_3691	A19Y_1509	NagF.	Zwf; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.	0.856
nifJ	nagF	A19Y_2986	A19Y_3691	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	NagF.	0.925
nifJ	pgi	A19Y_2986	A19Y_2269	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	Pgi; Belongs to the GPI family.	0.941
nifJ	ppsA	A19Y_2986	A19Y_0273	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	PpsA.	0.924
nifJ	ptsG	A19Y_2986	A19Y_3689	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	PtsG.	0.698
nifJ	ptsI-2	A19Y_2986	A19Y_3690	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	PtsI.	0.925
nifJ	pykF	A19Y_2986	A19Y_4397	NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.	PykF; Belongs to the pyruvate kinase family.	0.959