STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacG6-phospho-beta-galactosidase; GC: 42.79%; Codon Adaptation Index (CAI): 0.786. LipoP prediction: SpI; Protein involved in lactose catabolism via tagatose-6-phosphate; Belongs to the glycosyl hydrolase 1 family (468 aa)    
Predicted Functional Partners:
lacE
Phosphotransferase system lactose-specific component IIBC, putative; GC: 45.28%; Transporter classification TC:4.A.3.1.1. Transmembrane domains: 8. Codon Adaptation Index (CAI): 0.776. Curator(s): J. Alves
 
 
 0.997
lacF
PTS system, lactose-specific IIA component, putative; GC: 44.34%; Transporter classification TC:4.A.3.1.1. Codon Adaptation Index (CAI): 0.761
 
 
 0.996
lacA
Galactose-6-phosphate isomerase subunit LacA; GC: 45.83%; Codon Adaptation Index (CAI): 0.805
  
 
 0.966
lacB
Galactose-6-phosphate isomerase subunit LacB; GC: 39.15%; Codon Adaptation Index (CAI): 0.818; Protein involved in intramolecular oxidoreductase activity, interconverting aldoses and ketoses and galactose-6-phosphate isomerase activity
 
 
 0.963
lacD
Tagatose 1,6-diphosphate aldolase; GC: 45.97%; Codon Adaptation Index (CAI): 0.791; Belongs to the aldolase LacD family
 
  
 0.886
SSA_0061
Tagatose 1,6-diphosphate aldolase; GC: 50.19%; Codon Adaptation Index (CAI): 0.765. Helix-turn-helix prediction: AraC. Curator(s): J. Alves; Protein involved in lactose catabolism via tagatose-6-phosphate; Belongs to the aldolase LacD family
  
  
 0.822
lacC
Tagatose-6-phosphate kinase; GC: 41.72%; Codon Adaptation Index (CAI): 0.773. Curator(s): J. Alves; Protein involved in lactose catabolism via tagatose-6-phosphate; Belongs to the carbohydrate kinase PfkB family. LacC subfamily
  
  
 0.792
SSA_0379
PTS system, beta-glucoside-specific EII component, putative; GC: 44.98%; Transporter classification TC:4.A.1.2.6. Transmembrane domains: 11. Codon Adaptation Index (CAI): 0.805. Curator(s): T. Kitten
  
  
 0.728
scrA
Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific, putative; GC: 42.12%; Transporter classification TC:4.A.1.2.1. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.809. Curator(s): M. Chaplin
  
  
 0.728
SSA_1752
Phosphotransferase system, trehalose-specific IIBC component, putative; GC: 44.53%; Transporter classification TC:4.A.1.2.4. Transmembrane domains: 10. Codon Adaptation Index (CAI): 0.774
  
  
 0.728
Your Current Organism:
Streptococcus sanguinis SK36
NCBI taxonomy Id: 388919
Other names: S. sanguinis SK36, Streptococcus sanguinis SK36, Streptococcus sanguinis str. SK36, Streptococcus sanguinis strain SK36
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