Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SSA_0917 | SSA_1736 | SSA_0917 | SSA_1736 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | 0.901 |
| SSA_0917 | cysD | SSA_0917 | SSA_0855 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | O-acetylhomoserine sulfhydrylase, putative; GC: 47.07%; Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki; Protein involved in transferase activity, transferring alkyl or aryl (other than methyl) groups and cellodextrin phosphorylase activity. | 0.922 |
| SSA_0917 | cysK | SSA_0917 | SSA_1839 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | Cysteine synthase, putative; GC: 47.42%; Codon Adaptation Index (CAI): 0.797; Protein involved in lyase activity and cysteine biosynthesis; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.832 |
| SSA_0917 | hom | SSA_0917 | SSA_1043 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | Homoserine dehydrogenase, putative; GC: 43.67%; Codon Adaptation Index (CAI): 0.82. SignalP prediction: Yes (prob. 0.959); Protein involved in amino acid binding and oxidoreductase activity. | 0.858 |
| SSA_0917 | luxS | SSA_0917 | SSA_1853 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | S-ribosylhomocysteine lyase, putative; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.952 |
| SSA_0917 | metB | SSA_0917 | SSA_1737 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | Cystathionine gamma-synthase, putative; GC: 45.6%; Codon Adaptation Index (CAI): 0.784; Protein involved in amino acid metabolism. | 0.958 |
| SSA_0917 | metE | SSA_0917 | SSA_0416 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, putative; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. | 0.934 |
| SSA_0917 | mmuM | SSA_0917 | SSA_1096 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | Methyltransferase, putative; GC: 43.99%; Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in homocysteine S-methyltransferase activity. | 0.917 |
| SSA_0917 | thrB | SSA_0917 | SSA_1044 | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | Homoserine kinase, putative; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.820 |
| SSA_1736 | SSA_0917 | SSA_1736 | SSA_0917 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | 0.901 |
| SSA_1736 | cysD | SSA_1736 | SSA_0855 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | O-acetylhomoserine sulfhydrylase, putative; GC: 47.07%; Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki; Protein involved in transferase activity, transferring alkyl or aryl (other than methyl) groups and cellodextrin phosphorylase activity. | 0.931 |
| SSA_1736 | cysK | SSA_1736 | SSA_1839 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | Cysteine synthase, putative; GC: 47.42%; Codon Adaptation Index (CAI): 0.797; Protein involved in lyase activity and cysteine biosynthesis; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.929 |
| SSA_1736 | hom | SSA_1736 | SSA_1043 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | Homoserine dehydrogenase, putative; GC: 43.67%; Codon Adaptation Index (CAI): 0.82. SignalP prediction: Yes (prob. 0.959); Protein involved in amino acid binding and oxidoreductase activity. | 0.811 |
| SSA_1736 | luxS | SSA_1736 | SSA_1853 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | S-ribosylhomocysteine lyase, putative; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. | 0.900 |
| SSA_1736 | metB | SSA_1736 | SSA_1737 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | Cystathionine gamma-synthase, putative; GC: 45.6%; Codon Adaptation Index (CAI): 0.784; Protein involved in amino acid metabolism. | 0.991 |
| SSA_1736 | metE | SSA_1736 | SSA_0416 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase, putative; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family. | 0.901 |
| SSA_1736 | mmuM | SSA_1736 | SSA_1096 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | Methyltransferase, putative; GC: 43.99%; Codon Adaptation Index (CAI): 0.767. Curator(s): T. Kitten; Protein involved in homocysteine S-methyltransferase activity. | 0.900 |
| SSA_1736 | thrB | SSA_1736 | SSA_1044 | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | Homoserine kinase, putative; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily. | 0.800 |
| cysD | SSA_0917 | SSA_0855 | SSA_0917 | O-acetylhomoserine sulfhydrylase, putative; GC: 47.07%; Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki; Protein involved in transferase activity, transferring alkyl or aryl (other than methyl) groups and cellodextrin phosphorylase activity. | Cobalamin-independent methionine synthase II, putative; GC: 48.28%; Codon Adaptation Index (CAI): 0.765. Curator(s): T. Kitten, J. Alves; Protein involved in methionine biosynthesis. | 0.922 |
| cysD | SSA_1736 | SSA_0855 | SSA_1736 | O-acetylhomoserine sulfhydrylase, putative; GC: 47.07%; Codon Adaptation Index (CAI): 0.799. Curator(s): L. Ozaki; Protein involved in transferase activity, transferring alkyl or aryl (other than methyl) groups and cellodextrin phosphorylase activity. | L-cysteine desulfhydrase, putative; GC: 45.5%; Codon Adaptation Index (CAI): 0.794; Protein involved in 1-aminocyclopropane-1-carboxylate synthase activity. | 0.931 |
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