STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (557 aa)    
Predicted Functional Partners:
hutH
KEGG: pen:PSEEN5096 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
 0.999
hutI
KEGG: pen:PSEEN5094 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3.
 
 
 0.999
ACA70934.1
Transcriptional regulator, histidine utilization repressor, GntR family; TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: pen:PSEEN5099 histidine utilization repressor.
 
  
 0.956
ACA70933.1
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; KEGG: pen:PSEEN5100 hydrolase.
 
  
 0.944
ACA70940.1
PFAM: N-formylglutamate amidohydrolase; KEGG: pen:PSEEN5093 N-formylglutamate amidohydrolase.
 
  
 0.896
ACA70935.1
PFAM: protein of unknown function DUF886; KEGG: pen:PSEEN5098 hypothetical protein.
 
  
 0.773
ACA74297.1
TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: pen:PSEEN3933 agmatinase; Belongs to the arginase family.
  
  
 0.639
ACA72748.1
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN3342 transporter, NCS1 family; Belongs to the purine-cytosine permease (2.A.39) family.
  
    0.540
ACA72762.1
PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: pen:PSEEN2038 permease, cytosine/purines, uracil, thiamine, allantoin permease family; Belongs to the purine-cytosine permease (2.A.39) family.
  
    0.540
ACA72794.1
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_pAT_304 high-affinity transport system for glycine betaine and proline.
  
    0.534
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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