STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA71391.1PFAM: Sel1 domain protein repeat-containing protein; KEGG: pen:PSEEN4538 alginate biosynthesis precursor AlgK. (475 aa)    
Predicted Functional Partners:
ACA71388.1
KEGG: pen:PSEEN4541 alginate biosynthesis protein AlgX.
 
 
 0.999
ACA71389.1
SMART: Parallel beta-helix repeat; Carbohydrate-binding and sugar hydrolysis; KEGG: pen:PSEEN4540 alginate-C5-mannuronan-epimerase AlgG.
 
  
 0.994
algL
Poly(beta-D-mannuronate) lyase; Catalyzes the depolymerization of alginate by cleaving the beta-1,4 glycosidic bond between two adjacent sugar residues via a beta-elimination mechanism. May serve to degrade mislocalized alginate that is trapped in the periplasmic space.
 
  
 0.992
ACA71393.1
KEGG: pen:PSEEN4536 glycosyl transferase Alg8.
 
 
 0.989
ACA71385.1
KEGG: pen:PSEEN4544 alginate O-acetylation protein AlgJ precursor.
 
 
 0.987
ACA71390.1
KEGG: pen:PSEEN4539 outer membrane protein AlgE.
  
  
 0.979
ACA71392.1
PFAM: type IV pilus assembly PilZ; KEGG: pen:PSEEN4537 alginate biosynthesis protein Alg44.
  
  
 0.977
ACA71386.1
PFAM: membrane bound O-acyl transferase MBOAT family protein; KEGG: pen:PSEEN4543 alginate O-acetylation protein AlgI; Belongs to the membrane-bound acyltransferase family.
 
 
 0.928
ACA71394.1
Nucleotide sugar dehydrogenase; KEGG: pen:PSEEN4535 GDP-mannose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.889
ACA71384.1
KEGG: pen:PSEEN4545 alginate O-acetyltransferase AlgF.
  
  
 0.883
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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