STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACA71644.1SMART: Water Stress and Hypersensitive response domain protein; KEGG: pen:PSEEN1228 hypothetical protein. (158 aa)    
Predicted Functional Partners:
ACA71646.1
KEGG: pen:PSEEN1230 hypothetical protein.
 
     0.885
ACA71643.1
PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1227 hypothetical protein.
       0.808
ACA71645.1
PFAM: SEC-C motif domain protein; KEGG: pen:PSEEN1229 hypothetical protein; Belongs to the UPF0225 family.
       0.808
ACA71032.1
PFAM: LmbE family protein; KEGG: pen:PSEEN4993 hypothetical protein.
  
     0.683
ACA71642.1
PFAM: peptidase S45 penicillin amidase; KEGG: pen:PSEEN1226 penicillin amidase.
 
     0.649
ACA73130.1
PFAM: outer membrane porin; KEGG: pen:PSEEN2805 phenylacetic acid-specific porin.
  
     0.647
ACA73057.1
PFAM: outer membrane porin; KEGG: pae:PA0755 probable porin.
  
     0.633
ACA71772.1
KEGG: pen:PSEEN1429 hypothetical protein.
  
     0.627
ACA71695.1
PFAM: outer membrane porin; KEGG: psb:Psyr_2127 outer membrane porin.
  
     0.625
ACA71528.1
PFAM: outer membrane porin; KEGG: pen:PSEEN4363 porin, OprD family.
  
     0.612
Your Current Organism:
Pseudomonas putida W619
NCBI taxonomy Id: 390235
Other names: P. putida W619, Pseudomonas putida str. W619, Pseudomonas putida strain W619
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