STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEF06138.1Type IX secretion system membrane protein, PorP/SprF family. (301 aa)    
Predicted Functional Partners:
SEF06130.1
WD40-like Beta Propeller Repeat.
 
     0.938
SEF06148.1
Gliding motility-associated C-terminal domain-containing protein.
 
     0.935
SEE38682.1
Protein involved in gliding motility SprE.
  
   
 0.746
SEF04513.1
Hypothetical protein.
  
     0.720
SEF01879.1
Protein involved in gliding motility GldJ.
 
     0.718
SEF11530.1
Protein of unknown function.
  
     0.717
SEF01534.1
Peptidoglycan-associated lipoprotein.
  
     0.707
SEE24419.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
     
 0.703
SEE33014.1
Tetratricopeptide repeat-containing protein.
  
     0.691
SEE51201.1
Protein involved in gliding motility GldD.
  
     0.690
Your Current Organism:
Salinimicrobium catena
NCBI taxonomy Id: 390640
Other names: CGMCC 1.6101, DSM 23553, Flavobacteriaceae bacterium HY1, JCM 14015, S. catena, Salegentibacter catena, Salegentibacter catena Ying et al. 2007, Salinimicrobium catena (Ying et al. 2007) Lim et al. 2008 emend. Nedashkovskaya et al. 2010, strain HY1
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