Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tpet_0191 | Tpet_0192 | Tpet_0191 | Tpet_0192 | Hypothetical protein. | Uncharacterized protein-like protein. | 0.772 |
Tpet_0191 | Tpet_0193 | Tpet_0191 | Tpet_0193 | Hypothetical protein. | PFAM: mannose-6-phosphate isomerase, type I. | 0.762 |
Tpet_0191 | Tpet_0194 | Tpet_0191 | Tpet_0194 | Hypothetical protein. | PFAM: protein of unknown function DUF342. | 0.762 |
Tpet_0191 | Tpet_0196 | Tpet_0191 | Tpet_0196 | Hypothetical protein. | Putative anti-sigma regulatory factor, serine/threonine protein kinase. | 0.731 |
Tpet_0191 | Tpet_0197 | Tpet_0191 | Tpet_0197 | Hypothetical protein. | Hypothetical protein. | 0.731 |
Tpet_0191 | Tpet_0200 | Tpet_0191 | Tpet_0200 | Hypothetical protein. | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.725 |
Tpet_0191 | dtd | Tpet_0191 | Tpet_0199 | Hypothetical protein. | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. | 0.725 |
Tpet_0191 | queH | Tpet_0191 | Tpet_0198 | Hypothetical protein. | Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). | 0.731 |
Tpet_0191 | trmFO | Tpet_0191 | Tpet_0195 | Hypothetical protein. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.731 |
Tpet_0192 | Tpet_0191 | Tpet_0192 | Tpet_0191 | Uncharacterized protein-like protein. | Hypothetical protein. | 0.772 |
Tpet_0192 | Tpet_0193 | Tpet_0192 | Tpet_0193 | Uncharacterized protein-like protein. | PFAM: mannose-6-phosphate isomerase, type I. | 0.784 |
Tpet_0192 | Tpet_0194 | Tpet_0192 | Tpet_0194 | Uncharacterized protein-like protein. | PFAM: protein of unknown function DUF342. | 0.782 |
Tpet_0192 | Tpet_0196 | Tpet_0192 | Tpet_0196 | Uncharacterized protein-like protein. | Putative anti-sigma regulatory factor, serine/threonine protein kinase. | 0.750 |
Tpet_0192 | Tpet_0197 | Tpet_0192 | Tpet_0197 | Uncharacterized protein-like protein. | Hypothetical protein. | 0.750 |
Tpet_0192 | Tpet_0200 | Tpet_0192 | Tpet_0200 | Uncharacterized protein-like protein. | (p)ppGpp synthetase I, SpoT/RelA; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. | 0.745 |
Tpet_0192 | dtd | Tpet_0192 | Tpet_0199 | Uncharacterized protein-like protein. | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. | 0.791 |
Tpet_0192 | queH | Tpet_0192 | Tpet_0198 | Uncharacterized protein-like protein. | Protein of unknown function DUF208; Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr). | 0.754 |
Tpet_0192 | trmFO | Tpet_0192 | Tpet_0195 | Uncharacterized protein-like protein. | Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.750 |
Tpet_0193 | Tpet_0191 | Tpet_0193 | Tpet_0191 | PFAM: mannose-6-phosphate isomerase, type I. | Hypothetical protein. | 0.762 |
Tpet_0193 | Tpet_0192 | Tpet_0193 | Tpet_0192 | PFAM: mannose-6-phosphate isomerase, type I. | Uncharacterized protein-like protein. | 0.784 |
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