STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpet_0453PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. (445 aa)    
Predicted Functional Partners:
Tpet_1352
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.937
Tpet_0196
Putative anti-sigma regulatory factor, serine/threonine protein kinase.
 
 
 0.883
Tpet_1663
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.854
Tpet_0452
PFAM: response regulator receiver.
  
    0.839
Tpet_0454
PFAM: protein of unknown function DUF28.
       0.818
Tpet_0450
Integral membrane protein-like protein.
     
 0.817
Tpet_0451
Uncharacterized protein-like protein.
       0.811
Tpet_0455
Hypothetical protein.
       0.768
Tpet_1504
PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated.
   
  
 0.746
Tpet_1429
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: CBS domain containing protein; ATP-binding region, ATPase domain protein domain protein.
  
 
 0.734
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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