STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpet_0637Glycoside hydrolase, family 43; Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyzes the internal cleavage of alpha-(1->5)-L-arabinofuranosyl residues in different arabinan-containing polysaccharides, and releases arabinotriose and arabinobiose as end products. It acts on branched arabinan (from sugar beet), but more slowly when compared to linear or debranched arabinan; Belongs to the glycosyl hydrolase 43 family. (471 aa)    
Predicted Functional Partners:
Tpet_0638
Hypothetical protein.
     0.991
Tpet_0640
Hypothetical protein.
     0.988
Tpet_0641
Hypothetical protein.
     0.975
Tpet_0642
SMART: LamG domain protein jellyroll fold domain protein.
     0.975
Tpet_1678
PFAM: FG-GAP repeat protein.
  
  
 0.777
Tpet_0633
Alpha-N-arabinofuranosidase; PFAM: Carbohydrate-binding, CenC domain protein domain protein; alpha-L-arabinofuranosidase domain protein.
 
  
 0.732
Tpet_0869
Alpha-glucuronidase; PFAM: glycoside hydrolase family 67; glycosyl hydrolase 67 C-teriminal domain protein; Glycosyl hydrolase 67 middle domain protein; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.714
Tpet_0631
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein.
 
  
 0.685
Tpet_0632
Hypothetical protein.
 
   
 0.671
Tpet_0639
PFAM: glycoside hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
 
    
0.667
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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