STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCPFAM: Glucuronate isomerase. (451 aa)    
Predicted Functional Partners:
Tpet_0856
PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain.
 
 
 0.988
uxuA
D-mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
  
 0.973
Tpet_0490
Beta-glucuronidase; PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.935
Tpet_1689
Beta-glucuronidase; PFAM: glycoside hydrolase family 2, immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2, TIM barrel; glycoside hydrolase family 2, sugar binding; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.935
Tpet_0480
Hypothetical protein.
 
  
 0.933
Tpet_0631
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein.
     
 0.817
Tpet_0633
Alpha-N-arabinofuranosidase; PFAM: Carbohydrate-binding, CenC domain protein domain protein; alpha-L-arabinofuranosidase domain protein.
     
 0.817
Tpet_0504
PFAM: Xylose isomerase domain protein TIM barrel.
    
  0.806
Tpet_0861
Hypothetical protein.
       0.752
Tpet_0857
PFAM: PfkB domain protein.
 
   
 0.655
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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