Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Tpet_1059 | Tpet_1060 | Tpet_1059 | Tpet_1060 | PFAM: protein of unknown function DUF322. | PFAM: Dak phosphatase. | 0.893 |
Tpet_1059 | Tpet_1061 | Tpet_1059 | Tpet_1061 | PFAM: protein of unknown function DUF322. | PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein. | 0.773 |
Tpet_1059 | Tpet_1063 | Tpet_1059 | Tpet_1063 | PFAM: protein of unknown function DUF322. | PFAM: ComEC/Rec2-related protein. | 0.771 |
Tpet_1059 | apgM | Tpet_1059 | Tpet_1062 | PFAM: protein of unknown function DUF322. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.771 |
Tpet_1059 | dxs | Tpet_1059 | Tpet_1058 | PFAM: protein of unknown function DUF322. | 1-Deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.811 |
Tpet_1059 | fhs | Tpet_1059 | Tpet_1054 | PFAM: protein of unknown function DUF322. | PFAM: formate-tetrahydrofolate ligase, FTHFS; Belongs to the formate--tetrahydrofolate ligase family. | 0.785 |
Tpet_1059 | folD | Tpet_1059 | Tpet_1055 | PFAM: protein of unknown function DUF322. | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.818 |
Tpet_1059 | nusB | Tpet_1059 | Tpet_1053 | PFAM: protein of unknown function DUF322. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.774 |
Tpet_1059 | xseA | Tpet_1059 | Tpet_1056 | PFAM: protein of unknown function DUF322. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.811 |
Tpet_1059 | xseB | Tpet_1059 | Tpet_1057 | PFAM: protein of unknown function DUF322. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.811 |
Tpet_1060 | Tpet_1059 | Tpet_1060 | Tpet_1059 | PFAM: Dak phosphatase. | PFAM: protein of unknown function DUF322. | 0.893 |
Tpet_1060 | Tpet_1061 | Tpet_1060 | Tpet_1061 | PFAM: Dak phosphatase. | PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein. | 0.811 |
Tpet_1060 | Tpet_1063 | Tpet_1060 | Tpet_1063 | PFAM: Dak phosphatase. | PFAM: ComEC/Rec2-related protein. | 0.836 |
Tpet_1060 | apgM | Tpet_1060 | Tpet_1062 | PFAM: Dak phosphatase. | Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.811 |
Tpet_1060 | dxs | Tpet_1060 | Tpet_1058 | PFAM: Dak phosphatase. | 1-Deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.805 |
Tpet_1060 | fhs | Tpet_1060 | Tpet_1054 | PFAM: Dak phosphatase. | PFAM: formate-tetrahydrofolate ligase, FTHFS; Belongs to the formate--tetrahydrofolate ligase family. | 0.746 |
Tpet_1060 | folD | Tpet_1060 | Tpet_1055 | PFAM: Dak phosphatase. | Methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.799 |
Tpet_1060 | nusB | Tpet_1060 | Tpet_1053 | PFAM: Dak phosphatase. | NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. | 0.739 |
Tpet_1060 | xseA | Tpet_1060 | Tpet_1056 | PFAM: Dak phosphatase. | Exodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. | 0.805 |
Tpet_1060 | xseB | Tpet_1060 | Tpet_1057 | PFAM: Dak phosphatase. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.771 |
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