STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tpet_1553PFAM: binding-protein-dependent transport systems inner membrane component. (577 aa)    
Predicted Functional Partners:
Tpet_1554
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.996
Tpet_1552
PFAM: extracellular solute-binding protein, family 1.
 0.991
Tpet_0966
PFAM: extracellular solute-binding protein, family 1.
 0.979
Tpet_0968
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.979
Tpet_1495
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.947
Tpet_1537
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.940
Tpet_0967
PFAM: binding-protein-dependent transport systems inner membrane component.
  
  
 
0.901
Tpet_1555
Arabinogalactan endo-1,4-beta-galactosidase; PFAM: Ig domain protein; glycosyl hydrolase 53 domain protein.
 
    0.860
Tpet_0634
PFAM: binding-protein-dependent transport systems inner membrane component.
  
   0.827
Tpet_1681
PFAM: binding-protein-dependent transport systems inner membrane component.
  
   0.810
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.