• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
mgsA protein (Thermotoga petrophila) - STRING interaction network
"mgsA" - TIGRFAM: methylglyoxal synthase in Thermotoga petrophila
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mgsATIGRFAM- methylglyoxal synthase; PFAM- MGS domain protein (166 aa)    
Predicted Functional Partners:
Tpet_0498
PFAM- iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase (364 aa)
      
 
  0.910
Tpet_1570
PFAM- aldo/keto reductase (379 aa)
              0.885
Tpet_1569
TIGRFAM- PAS sensor protein; diguanylate cyclase; PFAM- GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART- PAS domain containing protein (643 aa)
              0.861
ldh
TIGRFAM- L-lactate dehydrogenase; PFAM- Lactate/malate dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; Belongs to the LDH/MDH superfamily. LDH family (319 aa)
          
  0.818
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3’-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family (180 aa)
            0.776
Tpet_1572
PFAM- NUDIX hydrolase; Belongs to the Nudix hydrolase family (179 aa)
              0.630
Tpet_1573
annotation not available (197 aa)
              0.629
smc
Chromosome partition protein Smc; Required for chromosome condensation and partitioning; Belongs to the SMC family (1170 aa)
              0.629
Tpet_1576
TIGRFAM- HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM- Haloacid dehalogenase domain protein hydrolase (225 aa)
              0.618
Tpet_1575
PFAM- GCN5-related N-acetyltransferase (279 aa)
              0.618
Your Current Organism:
Thermotoga petrophila
NCBI taxonomy Id: 390874
Other names: T. petrophila RKU-1, Thermotoga petrophila, Thermotoga petrophila RKU-1, Thermotoga petrophila str. RKU-1, Thermotoga petrophila strain RKU-1, Thermotoga sp. RKU-1
Server load: low (10%) [HD]
STRING is part of the ELIXIR infrastructure: it is one of ELIXIR's Core Data Resources.  Learn more >