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rny protein (Thermosipho melanesiensis) - STRING interaction network
"rny" - Ribonuclease Y in Thermosipho melanesiensis
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonuclease Y; Endoribonuclease that initiates mRNA decay (510 aa)    
Predicted Functional Partners:
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (349 aa)
         
  0.897
recX
Regulatory protein RecX; Modulates RecA activity (129 aa)
              0.893
Tmel_1157
RNA 2’,3’-cyclic phosphodiesterase; Hydrolyzes RNA 2’,3’-cyclic phosphodiester to an RNA 2’- phosphomonoester (189 aa)
              0.893
Tmel_1156
TIGRFAM- CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM- CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family (173 aa)
              0.893
rimO
Ribosomal protein S12 methylthiotransferase RimO; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily (427 aa)
              0.893
Tmel_1154
annotation not available (171 aa)
              0.893
Tmel_1153
annotation not available (175 aa)
              0.863
Tmel_1152
annotation not available (692 aa)
              0.826
Tmel_1151
PFAM- DNA polymerase III, delta (316 aa)
              0.826
Tmel_1490
PFAM- PSP1 domain protein (294 aa)
 
          0.757
Your Current Organism:
Thermosipho melanesiensis
NCBI taxonomy Id: 391009
Other names: T. melanesiensis BI429, Thermosipho melanesiensis, Thermosipho melanesiensis BI429, Thermosipho melanesiensis str. BI429, Thermosipho melanesiensis strain BI429
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