Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EHF_0965 | def | EHF_0965 | EHF_0966 | uracil-DNA glycosylase, 4 family protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.733 |
EHF_0965 | ssb4 | EHF_0965 | EHF_0716 | uracil-DNA glycosylase, 4 family protein. | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.506 |
EHF_0965 | yeaZ | EHF_0965 | EHF_0641 | uracil-DNA glycosylase, 4 family protein. | tRNA threonylcarbamoyl adenosine modification protein YeaZ. | 0.575 |
def | EHF_0965 | EHF_0966 | EHF_0965 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | uracil-DNA glycosylase, 4 family protein. | 0.733 |
ssb4 | EHF_0965 | EHF_0716 | EHF_0965 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | uracil-DNA glycosylase, 4 family protein. | 0.506 |
yeaZ | EHF_0965 | EHF_0641 | EHF_0965 | tRNA threonylcarbamoyl adenosine modification protein YeaZ. | uracil-DNA glycosylase, 4 family protein. | 0.575 |