STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hutUUrocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate. (549 aa)    
Predicted Functional Partners:
Sare_0996
KEGG: stp:Strop_1106 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
 0.999
hutI
KEGG: stp:Strop_1107 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
 
 0.999
Sare_2092
KEGG: rme:Rmet_0231 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
  
 0.972
Sare_0998
TIGRFAM: formiminoglutamate deiminase; PFAM: amidohydrolase; Amidohydrolase 3; KEGG: stp:Strop_1108 formiminoglutamate deiminase.
 
  
 0.963
Sare_0999
KEGG: stp:Strop_1109 amidase, hydantoinase/carbamoylase family; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
       0.923
Sare_1001
Transcriptional regulator, RpiR family; PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: stp:Strop_1111 helix-turn-helix protein RpiR.
       0.818
Sare_1191
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: stp:Strop_1302 amidohydrolase.
  
  
 0.693
Sare_2139
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ang:An14g03560 hypothetical protein Pfam: Amidohydro_1 Amidohydro_3.
  
  
 0.693
Sare_4704
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: stp:Strop_1522 amidohydrolase.
  
  
 0.693
Sare_1002
PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: stp:Strop_1112 MOSC domain containing protein.
       0.556
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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