STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemLTIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: stp:Strop_4100 glutamate-1-semialdehyde-2,1-aminomutase. (444 aa)    
Predicted Functional Partners:
Sare_0429
Porphobilinogen synthase; PFAM: delta-aminolevulinic acid dehydratase; KEGG: stp:Strop_0359 porphobilinogen synthase; Belongs to the ALAD family.
 
 
 0.993
hemA
glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).
 
 0.990
Sare_4518
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: stp:Strop_4098 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen.
  
  
 0.961
Sare_4519
PFAM: Phosphoglycerate mutase; KEGG: stp:Strop_4099 phosphoglycerate mutase.
  
    0.944
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
 
  
 0.927
Sare_0569
PFAM: aminotransferase class-III; KEGG: rpd:RPD_2366 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.923
Sare_4517
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: stp:Strop_4097 cytochrome c biogenesis protein, transmembrane region.
  
  
 0.898
Sare_4562
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KEGG: mxa:MXAN_3779 non-ribosomal peptide synthetase/polyketide synthase.
   
 
 0.890
Sare_4515
PFAM: cytochrome c assembly protein; KEGG: stp:Strop_4095 cytochrome c assembly protein.
 
  
 0.884
Sare_2407
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: sde:Sde_3725 polyketide synthase modules and related proteins-like.
  
 
 0.837
Your Current Organism:
Salinispora arenicola
NCBI taxonomy Id: 391037
Other names: S. arenicola CNS-205, Salinispora arenicola CNS-205, Salinispora arenicola str. CNS-205, Salinispora arenicola strain CNS-205
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