STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_0433PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: bxe:Bxe_A0656 putative galactonate dehydratase (382 aa)    
Predicted Functional Partners:
Bphy_2618
PFAM: 2-keto-3-deoxy-galactonokinase; KEGG: bxe:Bxe_A0543 putative 2-dehydro-3-deoxygalactonate kinase, DgoK-like
 
 
 0.977
Bphy_2617
PFAM: KDPG and KHG aldolase; KEGG: bxe:Bxe_A0544 putative 2-keto-3-deoxy-6-phosphogluconate aldolase, DgoA-like
 
   
 0.793
Bphy_0434
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A0657 transcriptional regulator, GntR family
 
   
 0.684
Bphy_4298
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; KEGG: bxe:Bxe_B2960 altronate dehydratase
 
  
 0.525
Bphy_0974
PFAM: PfkB domain protein; KEGG: bxe:Bxe_A2336 sugar kinase, ribokinase family
   
 
 0.457
Bphy_1667
PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: bxe:Bxe_A2512 transcriptional regulator, GntR family
 
   
 0.450
Bphy_5350
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: reh:H16_A1961 benzoate 1,2-dioxygenase electron transfer component
  
  
 0.439
Bphy_0498
PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: bxe:Bxe_A0730 putative D-arabinitol 4-dehydrogenase
 
   
 0.426
Bphy_5155
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein; KEGG: reh:H16_A2758 altronate dehydratase
 
  
 0.421
Bphy_0046
PFAM: HpcH/HpaI aldolase; KEGG: bxe:Bxe_A4404 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family
 
  
 0.417
Your Current Organism:
Burkholderia phymatum
NCBI taxonomy Id: 391038
Other names: B. phymatum STM815, Burkholderia phymatum, Burkholderia phymatum STM815, Burkholderia phymatum str. STM815, Burkholderia phymatum strain STM815, Burkholderia sp. STM815
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