STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_1359Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (363 aa)    
Predicted Functional Partners:
Bphy_5016
TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; KEGG: reu:Reut_B5878 alanine dehydrogenase and pyridine nucleotide transhydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.981
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
   
 0.957
ddl
D-alanine--D-alanine ligase; Cell wall formation.
 
 
 0.948
Bphy_0930
PFAM: aminotransferase class I and II; KEGG: bxe:Bxe_A2382 putative aspartate transaminase.
    
 0.822
Bphy_2424
PFAM: aminotransferase class V; KEGG: bcn:Bcen_0344 aminotransferase, class V.
    
 0.812
Bphy_4253
Serine--glyoxylate transaminase; PFAM: aminotransferase class V; KEGG: bxe:Bxe_B3001 serine--glyoxylate transaminase.
    
 0.812
Bphy_4561
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: bvi:Bcep1808_6052 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
 
 0.806
Bphy_5177
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: msm:MSMEG_4138 aliphatic nitrilase.
  
 
 0.806
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
 
    0.702
nadD
Nicotinate (nicotinamide) nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.702
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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