STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bphy_3470PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_B1028 putative 3-oxoacyl-(acyl-carrier protein) reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)    
Predicted Functional Partners:
rhmD
Mandelate racemase/muconate lactonizing protein; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).
 
  
 0.954
Bphy_4295
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_B2957 putative short-chain dehydrogenase/reductase.
  
  
 
0.921
Bphy_3531
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: bch:Bcen2424_5776 fumarylacetoacetate (FAA) hydrolase.
   
 0.911
Bphy_3469
PFAM: major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1029 major facilitator superfamily (MFS) metabolite/H+ symporter.
  
    0.597
Bphy_3467
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B1031 putative short-chain alcohol dehydrogenase.
 
    
0.594
Bphy_2894
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bxe:Bxe_A0204 putative oxidoreductase.
  
     0.534
Bphy_3290
TIGRFAM: choline-sulfatase; PFAM: sulfatase; KEGG: bpd:BURPS668_A0841 sulfatase family protein.
   
 
 0.434
Bphy_5081
TIGRFAM: malonate decarboxylase, epsilon subunit; PFAM: Acyl transferase; KEGG: bxe:Bxe_B1850 putative acyl transferase.
 
 0.430
Your Current Organism:
Paraburkholderia phymatum
NCBI taxonomy Id: 391038
Other names: Burkholderia phymatum STM815, Burkholderia sp. STM815, P. phymatum STM815, Paraburkholderia phymatum STM815
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.