Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABI61705.1 | ABI62779.1 | GbCGDNIH1_0807 | GbCGDNIH1_1881 | Dihydroorotase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.980 |
ABI61705.1 | ABI63189.1 | GbCGDNIH1_0807 | GbCGDNIH1_2291 | Dihydroorotase. | Dihydroorotase. | 0.928 |
ABI61705.1 | carA | GbCGDNIH1_0807 | GbCGDNIH1_2286 | Dihydroorotase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.984 |
ABI61705.1 | carB | GbCGDNIH1_0807 | GbCGDNIH1_2288 | Dihydroorotase. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.984 |
ABI61705.1 | pyrB | GbCGDNIH1_0807 | GbCGDNIH1_0809 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
ABI61705.1 | pyrE | GbCGDNIH1_0807 | GbCGDNIH1_0893 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.769 |
ABI61705.1 | pyrF | GbCGDNIH1_0807 | GbCGDNIH1_2018 | Dihydroorotase. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.769 |
ABI61705.1 | topA | GbCGDNIH1_0807 | GbCGDNIH1_0804 | Dihydroorotase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.822 |
ABI62779.1 | ABI61705.1 | GbCGDNIH1_1881 | GbCGDNIH1_0807 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Dihydroorotase. | 0.980 |
ABI62779.1 | ABI63189.1 | GbCGDNIH1_1881 | GbCGDNIH1_2291 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Dihydroorotase. | 0.982 |
ABI62779.1 | carA | GbCGDNIH1_1881 | GbCGDNIH1_2286 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.938 |
ABI62779.1 | carB | GbCGDNIH1_1881 | GbCGDNIH1_2288 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.945 |
ABI62779.1 | pyrB | GbCGDNIH1_1881 | GbCGDNIH1_0809 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.944 |
ABI62779.1 | pyrE | GbCGDNIH1_1881 | GbCGDNIH1_0893 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.993 |
ABI62779.1 | pyrF | GbCGDNIH1_1881 | GbCGDNIH1_2018 | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.914 |
ABI62881.1 | purA | GbCGDNIH1_1983 | GbCGDNIH1_0847 | Asparagine synthetase family protein. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.928 |
ABI62881.1 | pyrB | GbCGDNIH1_1983 | GbCGDNIH1_0809 | Asparagine synthetase family protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.926 |
ABI63189.1 | ABI61705.1 | GbCGDNIH1_2291 | GbCGDNIH1_0807 | Dihydroorotase. | Dihydroorotase. | 0.928 |
ABI63189.1 | ABI62779.1 | GbCGDNIH1_2291 | GbCGDNIH1_1881 | Dihydroorotase. | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.982 |
ABI63189.1 | carA | GbCGDNIH1_2291 | GbCGDNIH1_2286 | Dihydroorotase. | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. | 0.986 |
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