Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABP89491.1 | ABP89492.1 | SSU05_0525 | SSU05_0526 | Hypothetical protein. | Cell division membrane protein; Belongs to the SEDS family. | 0.536 |
ABP89491.1 | ppc | SSU05_0525 | SSU05_0527 | Hypothetical protein. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.576 |
ABP89492.1 | ABP89491.1 | SSU05_0526 | SSU05_0525 | Cell division membrane protein; Belongs to the SEDS family. | Hypothetical protein. | 0.536 |
ABP89492.1 | ABP89494.1 | SSU05_0526 | SSU05_0528 | Cell division membrane protein; Belongs to the SEDS family. | DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.587 |
ABP89492.1 | ABP89495.1 | SSU05_0526 | SSU05_0529 | Cell division membrane protein; Belongs to the SEDS family. | Hypothetical protein. | 0.537 |
ABP89492.1 | ppc | SSU05_0526 | SSU05_0527 | Cell division membrane protein; Belongs to the SEDS family. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.745 |
ABP89492.1 | tpiA | SSU05_0526 | SSU05_0531 | Cell division membrane protein; Belongs to the SEDS family. | Putative triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.415 |
ABP89494.1 | ABP89492.1 | SSU05_0528 | SSU05_0526 | DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Cell division membrane protein; Belongs to the SEDS family. | 0.587 |
ABP89494.1 | ABP89495.1 | SSU05_0528 | SSU05_0529 | DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.892 |
ABP89494.1 | ppc | SSU05_0528 | SSU05_0527 | DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.570 |
ABP89495.1 | ABP89492.1 | SSU05_0529 | SSU05_0526 | Hypothetical protein. | Cell division membrane protein; Belongs to the SEDS family. | 0.537 |
ABP89495.1 | ABP89494.1 | SSU05_0529 | SSU05_0528 | Hypothetical protein. | DNA-directed RNA polymerase specialized sigma subunit; Sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily. | 0.892 |
ABP89495.1 | ppc | SSU05_0529 | SSU05_0527 | Hypothetical protein. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.570 |
ABP89510.1 | ABP90170.1 | SSU05_0544 | SSU05_1204 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Citrate synthase; Belongs to the citrate synthase family. | 0.413 |
ABP89510.1 | eno | SSU05_0544 | SSU05_1503 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Putative enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | 0.987 |
ABP89510.1 | ppc | SSU05_0544 | SSU05_0527 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.927 |
ABP89510.1 | tpiA | SSU05_0544 | SSU05_0531 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Putative triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.855 |
ABP90170.1 | ABP89510.1 | SSU05_1204 | SSU05_0544 | Citrate synthase; Belongs to the citrate synthase family. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.413 |
ABP90170.1 | eno | SSU05_1204 | SSU05_1503 | Citrate synthase; Belongs to the citrate synthase family. | Putative enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. | 0.473 |
ABP90170.1 | ppc | SSU05_1204 | SSU05_0527 | Citrate synthase; Belongs to the citrate synthase family. | Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle. | 0.855 |
page 1 of 3