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KAOT1_02792 protein (Kordia algicida) - STRING interaction network
"KAOT1_02792" - RNA methylase, SpoU family protein in Kordia algicida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_02792RNA methylase, SpoU family protein (171 aa)    
Predicted Functional Partners:
KAOT1_02802
Uncharacterized protein (213 aa)
              0.867
KAOT1_02797
Uncharacterized protein (113 aa)
              0.859
rnr
Ribonuclease R ; 3’-5’ exoribonuclease that releases 5’-nucleoside monophosphates and is involved in maturation of structured RNAs (731 aa)
 
    0.768
KAOT1_02782
Uncharacterized protein (362 aa)
              0.747
KAOT1_02777
Uncharacterized protein (394 aa)
              0.747
KAOT1_02807
Uncharacterized protein (248 aa)
              0.656
KAOT1_03477
Uncharacterized protein (470 aa)
   
 
  0.613
upp
Threonyl-tRNA synthetase (647 aa)
 
 
  0.590
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (98 aa)
   
      0.569
KAOT1_06842
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (114 aa)
   
 
  0.548
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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