STRINGSTRING
rny protein (Kordia algicida) - STRING interaction network
"rny" - Ribonuclease Y in Kordia algicida
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnyRibonuclease Y ; Endoribonuclease that initiates mRNA decay (523 aa)    
Predicted Functional Partners:
KAOT1_17733
Uncharacterized protein (443 aa)
 
          0.739
KAOT1_10096
Uncharacterized protein (337 aa)
 
   
  0.693
KAOT1_10976
CinA-like protein (418 aa)
         
  0.677
rplE
50S ribosomal protein L5 ; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs (183 aa)
 
   
  0.552
KAOT1_04575
Cell division protein (824 aa)
 
          0.534
rpsQ
30S ribosomal protein S17 ; One of the primary rRNA binding proteins, it binds specifically to the 5’-end of 16S ribosomal RNA (85 aa)
 
     
  0.524
KAOT1_02947
Uncharacterized protein (37 aa)
              0.493
KAOT1_11677
tRNA nucleotidyltransferase (474 aa)
 
   
    0.482
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (739 aa)
         
  0.461
KAOT1_06527
Isopentenyl-diphosphate-tRNA isopentenyltransferase ; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) (301 aa)
         
  0.457
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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