STRINGSTRING
KAOT1_03147 protein (Kordia algicida) - STRING interaction network
"KAOT1_03147" - S23 ribosomal in Kordia algicida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_03147S23 ribosomal (117 aa)    
Predicted Functional Partners:
KAOT1_19442
Intervening sequence, 23S rRNA (126 aa)
   
          0.778
KAOT1_11857
23S rRNA gene intervening sequence Orf (122 aa)
   
          0.775
KAOT1_03142
UPF0173 metal-dependent hydrolase KAOT1_03142 (225 aa)
              0.686
menA
1,4-dihydroxy-2-naphthoate octaprenyltransferase ; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK) (311 aa)
              0.646
KAOT1_03152
O-succinylbenzoate synthase ; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) (346 aa)
              0.634
KAOT1_03157
Uncharacterized protein (394 aa)
              0.614
KAOT1_20532
Uncharacterized protein (108 aa)
   
          0.537
KAOT1_03132
Hypothetical cytosolic protein (270 aa)
              0.467
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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