STRINGSTRING
KAOT1_04175 protein (Kordia algicida) - STRING interaction network
"KAOT1_04175" - Alginate lyase in Kordia algicida
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KAOT1_04175Alginate lyase (529 aa)    
Predicted Functional Partners:
KAOT1_04170
Putative alginate lyase (208 aa)
           
0.859
KAOT1_13477
Natural resistance-associated macrophage protein (424 aa)
 
          0.766
KAOT1_04160
Poly(Beta-D-mannuronate) lyase (317 aa)
 
          0.765
KAOT1_04225
Short-chain dehydrogenase/reductase SDR (254 aa)
 
          0.715
KAOT1_20862
Uncharacterized protein (353 aa)
   
          0.715
KAOT1_20857
Uncharacterized protein (652 aa)
   
          0.698
KAOT1_04215
Transcriptional regulator (GntR family) protein (233 aa)
 
          0.682
KAOT1_13487
Short-chain dehydrogenase/reductase SDR (255 aa)
 
          0.682
KAOT1_20832
Uncharacterized protein (415 aa)
   
          0.677
KAOT1_21951
Putative phosphonate uptake related protein (141 aa)
   
          0.669
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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