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ychF protein (Kordia algicida) - STRING interaction network
"ychF" - Ribosome-binding ATPase YchF in Kordia algicida
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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ychFRibosome-binding ATPase YchF ; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner (363 aa)    
Predicted Functional Partners:
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (739 aa)
   
   
  0.764
rplI
50S ribosomal protein L9 ; Binds to the 23S rRNA (149 aa)
 
  0.764
KAOT1_10906
Glutamine amidotransferase ; Catalyzes the synthesis of GMP from XMP (511 aa)
   
   
  0.728
KAOT1_12107
30S ribosomal protein S5 ; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body (174 aa)
   
 
  0.725
KAOT1_10491
Triose-phosphate isomerase ; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P) (249 aa)
 
        0.718
ctc
General stress protein CTC ; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance (199 aa)
   
 
  0.695
KAOT1_12162
30S ribosomal protein S3 ; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation (240 aa)
     
 
  0.676
KAOT1_21642
30S ribosomal protein S15 ; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome (89 aa)
   
 
  0.664
rpsG
30S ribosomal protein S7 ; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA (158 aa)
   
 
  0.659
rpsR
30S ribosomal protein S18 ; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (98 aa)
   
 
  0.659
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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