STRINGSTRING
upp protein (Kordia algicida) - STRING interaction network
"upp" - Threonyl-tRNA synthetase in Kordia algicida
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
uppThreonyl-tRNA synthetase (647 aa)    
Predicted Functional Partners:
KAOT1_19252
Uridylate kinase ; Catalyzes the reversible phosphorylation of UMP to UDP (235 aa)
     
 
  0.951
cmk
Cytidine monophosphate kinase (229 aa)
       
  0.949
tadA
tRNA-specific adenosine deaminase ; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2) (151 aa)
   
 
  0.949
KAOT1_06842
50S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (114 aa)
   
  0.941
metG
Methionyl-tRNA synthetase ; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (739 aa)
 
   
  0.914
rplB
50S ribosomal protein L2 ; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome (274 aa)
   
  0.914
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (209 aa)
     
  0.903
KAOT1_08498
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (117 aa)
 
  0.899
rplQ
50S ribosomal protein L17 (157 aa)
     
  0.898
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (205 aa)
     
  0.895
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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