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KAOT1_06842 protein (Kordia algicida) - STRING interaction network
"KAOT1_06842" - 50S ribosomal protein L20 in Kordia algicida
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
KAOT1_0684250S ribosomal protein L20 ; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (114 aa)    
Predicted Functional Partners:
rpmA
50S ribosomal protein L27 (86 aa)
 
  0.996
KAOT1_08498
50S ribosomal protein L19 ; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (117 aa)
 
  0.995
rpmI
50S ribosomal protein L35 (65 aa)
 
  0.995
rplM
50S ribosomal protein L13 ; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (151 aa)
 
  0.994
rplD
50S ribosomal protein L4 ; Forms part of the polypeptide exit tunnel (209 aa)
 
  0.993
rplC
50S ribosomal protein L3 ; One of the primary rRNA binding proteins, it binds directly near the 3’-end of the 23S rRNA, where it nucleates assembly of the 50S subunit (205 aa)
 
  0.992
rplA
50S ribosomal protein L1 ; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (230 aa)
   
  0.992
rplK
50S ribosomal protein L11 ; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors (145 aa)
   
  0.992
rplQ
50S ribosomal protein L17 (157 aa)
   
  0.991
rplV
50S ribosomal protein L22 ; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome (135 aa)
   
  0.990
Your Current Organism:
Kordia algicida
NCBI taxonomy Id: 391587
Other names: K. algicida, K. algicida OT-1, Kordia, Kordia Sohn et al. 2004, Kordia algicida, Kordia algicida OT-1, Kordia algicida Sohn et al. 2004, Kordia algicida str. OT-1, Kordia algicida strain OT-1
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